James R. Green  PhD (Queen's), P.Eng., SMIEEE

Associate Professor

James Green - Publications

Publications

A summary of some of my publications is available through my Google Scholar and my ResearchGate Profiles.

Refereed journal publications

Refereed conference publications

  • [C41] Nizami S, Bekele A, Hozayen M, Greenwood K, Harrold J, Green JR, “Comparing time and frequency domain estimation of neonatal respiratory rate using pressure-sensitive mats,” IEEE International Symposium on Medical Measurements and Applications (MeMeA), Rochester, MN, USA, 7-10 May 2017. Awarded the IEEE MeMeA "Women in Engineering Best Paper"
  • [C40] Nizami S, Cohen-McFarlane M, Green JR, Goubran RA, “Comparing metrological properties of pressure-sensitive mats for continuous patient monitoring,” 2017 IEEE Sensors Applications Symposium, Glassboro, New Jersey, 13-15 March 2017.
  • [C39] Cohen-McFarlane M, Green JR, Goubran RA, Knoefel F, "Smart Monitoring of Fluid Intake and Bladder Voiding using Pressure Sensitive Mats", 37th Annual International Conference of the IEEE-EMBS (EMBC), Orlando, Florida, 16-20 Aug 2016.
  • [C38] Dick K, Green JR, "Comparison of Sequence- and Structure-Based Protein-Protein Interaction Sites", IEEE EMBS ISC 2016, Ottawa, Canada, May 2016.
  • [C37] Barnes B, Karimloo M, Schoenrock A, Burnside D, Cassol E, Wong A, Dehne F, Golshani A, Green JR, "Predicting Novel Protein-Protein Interactions Between the HIV-1 Virus and Homo Sapiens", IEEE EMBS ISC 2016, Ottawa, Canada, May 2016. (Awarded 3rd Prize in Student Paper Competition)
  • [C36] Cohen-McFarlane M, Green JR, Goubran RA, Knoefel F, "Monitoring Congestive Heart Failure using Pressure-Sensitive Mats", IEEE International Symposium on Medical Measurements and Applications (MeMeA), Benevento, Italy, 15-18 May 2016.
  • [C35] Cohen-McFarlane M, Green JR, Goubran RA, Knoefel F, "Characterization of Measurements from Pressure Sensitive Mats using an Anthropomorphic Body Model", IEEE International Instrmentation and Measurement Technology Conference, Taipei, Taiwan, 23-26 May 2016.
  • [C34] Schoenrock A, Burnside D, Moteshareie H, Green JR, Wong A, Golshani A, Dehne F, "Engineering Inhibitory Proteins with InSiPS: The In-Silico Protein Synthesizer", Supercomputing 2015, Austin, Texas, Nov 2015.
  • [C33] Nizami S, Green JR, McGregor C, "An Artifact Detection Framework for Clinical Decision Support Systems", World Congress on Medical Physics & Biomedical Engineering, Toronto, Canada, June 2015.
  • [C32] Peace RJ, Green JR, "Updated Free Energy Parameters Increase MicroRNA Prediction Performance", World Congress on Medical Physics & Biomedical Engineering, Toronto, Canada, June 2015.
  • [C31] Moradshahi P, Green JR, Lemair E.D, Baddour, N, "Differentiating Two Daily Activities Through Analysis of Short Ambulatory Video Clips", IEEE International Symposium on Medical Measurements and Applications, Gatineau, Canada, May 2013.
  • [C30] Fraser GD, Chan ADC, Green JR, MacIsaac D, "Biosignal Quality Analysis of Surface EMG using a Correlation Coefficient Test for Normality", IEEE International Symposium on Medical Measurements and Applications, Gatineau, Canada, May 2013.
  • [C29] Chao S, Green JR, Smith J.C, "De Novo Peptide Sequencing Using General-Purpose Computing On a Graphics Processing Unit", 36th Conference of the Canadian Medical & Biological Engineering Society, Ottawa, Canada, May 2013. (Awarded 2nd Prize in Student Paper Competition)
  • [C28] Amos-Binks AR, Green JR, “Calibration Interface for the Electronic Swim Coach”, 36th Conference of the Canadian Medical & Biological Engineering Society, Ottawa, Canada, May 2013.
  • [C27] Ghadiri A, Green JR, Marble AE, “Using Local Binary Patterns for Non-Contact Optical Tongue Tracking”, 36th Conference of the Canadian Medical & Biological Engineering Society, Ottawa, Canada, May 2013.
  • [C26] Miyata C, Greiss R, Green JR, Ryan J, “RUTalking2Me? An Assistive Device Combining Beamforming And Speech Recognition”, 36th Conference of the Canadian Medical & Biological Engineering Society, Ottawa, Canada, May 2013 .
  • [C25] Abser N, MacIsaac D, Chan ADC, Fraser G.D, Green JR, "CleanEMG: Comparing interpolation strategies for power line interference quantification in surface EMG signals", 35th Conference of the Canadian Medical & Biological Engineering Society, Halifax, Canada, 2012.
  • [C24] Fraser G.D, Chan ADC, Green JR, MacIsaac D, "Detection of ADC clipping, quantization noise, and amplifier saturation in surface electromyography", IEEE International Symposium on Medical Measurements and Applications, pp. 162-166, Budapest, Hungary, 2012.
  • [C23] Fraser G.D, Chan ADC, Green JR, MacIsaac D, "Removal of electrocardiogram artifacts in surface electromyography using a moving average method", IEEE International Symposium on Medical Measurements and Applications, Budapest, Hungary, pp. 128-131, 2012.
  • [C22] Iyuke, F, Green, JR, Willmore, W, “Active learning for the prediction of asparagine/aspartate hydroxylation sites on proteins”, Computation Intelligence and Bioinformatics (CIB2011), Pittsburgh PA, 7-9 Nov 2011.
  • [C21] Nizami, S, Green, JR, McGregor, C, "Service oriented architecture to support real-time implementation of artifact detection in critical care monitoring.", 32nd Annual International Conference of the IEEE-EMBS (EMBC), Boston MA, USA, 2011.
  • [C20] Fraser G.D, Chan ADC, Green JR, Abser N, MacIsaac D, "CleanEMG - Power line inteference estimation in sEMG using an adaptive least squares algorithm", 32nd Annual International Conference of the IEEE-EMBS (EMBC), Boston MA, USA, 2011.
  • [C19] Abser N, MacIsaac D, Fraser G, Chan ADC, Green JR, "CleanEMG: Quantifying power line interference in surface EMG signals", 34th Conference of the Canadian Medical & Biological Engineering Society and Festival of International Conferences on Caregiving, Disability, Aging and Technology, Toronto, Canada, 69825, pp. 1-4, 2011.
  • [C18] Schoenrock, A, Dehne, F, Green, JR, Golshani, A, Pitre, S, “MP-PIPE: A Massively Parallel Protein-Protein Interaction Prediction Engine”, International Conference on Supercomputing (ICS'11), Tuscon AZ, USA, May 31-June 4, 11 pages, 2011.
  • [C17] Patulea, C, Peace, R, Green, JR, “CUDA-accelerated Genetic Feedforward-ANN Training for Data Mining”, HPCS2010, Toronto ON, 5-9 June 2010.
  • [C16] Peace, R, Mahmoud, H, Green, JR, “Exact String Matching For MS/MS Protein Identification Using the Cell Broadband Engine”, CMBEC33, Vancouver BC, 15-18 June 2010.
  • [C15] Walia, M, Lukmanji, T, Farrell, R, Green, JR, “Towards Development of a Robotic Guide Dog”, CMBEC33, Vancouver BC, 15-18 June 2010.
  • [C14] Salehi-Abari, O, Alaca, F, Green, JR, Goubran, R, “Application Of Sensor Networks In A Smart Apartment”, CMBEC33, Vancouver BC, 15-18 June 2010.
  • [C13] Peace, R, Stewart, T, Green, JR, Smith, J, "Analysis of Redundant Peaks in LC-MS/MS Datasets", IEEE International Workshop on Medical Measurements and Applications (MeMeA), Ottawa, 30 April-1 May 2010.
  • [C12] Nizami, S, Green, JR, Eklund, J.M, McGregor, C, "Heart Disease Classification through HRV Analysis Using Parallel Cascade Identification and Fast Orthogonal Search", IEEE International Workshop on Medical Measurements and Applications (MeMeA), Ottawa, 30 April-1 May 2010.
  • [C11] Wetherow, O, Green, JR, Chan, ADC, Golshani, A, "Plate Analyzer - A Yeast Colony Size Measurement System", IEEE International Workshop on Medical Measurements and Applications (MeMeA), Ottawa, 30 April-1 May 2010.
  • [C10] Green, JR, Mahmoud, H, Dumontier, M, "Modeling Tryptic Digestion on the Cell BE Processor", CCECE09, St. John's NFLD, 3-6 May 2009.
  • [C9] Yuan, M.Y, Green, JR, Goubran, R, "Stove Top Thermal Monitoring For Assisted Living At Home", CMBEC31, Montreal, 10-13 June 2008.
  • [C8] Chan, ADC. and Green, JR, "Smart Rollator Prototype", MeMeA 2008, Ottawa, 8-9 May, p97-100, 2008.
  • [C7] Aboul-Magd, Md. and Green, JR, “PCI-SS: Web-Based Human and Machine Interfaces to Protein Secondary Structure Prediction”, CCECE08, Niagara Falls, Ontario, 4-7 May, 2008.
  • [C6] Sadeghian, A, Yim, CH, Chan, ADC, Green, JR, "Eye-Interact: A Low-Cost Eye Movement Controlled Communication System", CMBEC30, Toronto, 16-19 June 2007.
  • [C5] Mulligan, K, LaRocque, J, Green, JR, "A Low Cost Non-Contact Approach to Tongue Tracking for Special Needs Children", CMBEC30, Toronto, 16-19 June 2007.
  • [C4] Green, JR, Dmochowski, GM, Golshani, A, "Prediction of Protein Sumoylation Sites Via Parallel Cascade Identification", CMBEC29, Vancouver, 1-3 June 2006.
  • [C3] Green, JR and Korenberg, MJ, "Nonlinear System Identification Provides Insight Into Protein Folding", CCECE06, Ottawa, Ontario, 7-10 May, 2006.
  • [C2] Bushel, P.R, Bennett, L, Hamadeh, H, Green, J, Ableson, A, Misener, S, Paules, R, Afshari, C, 2002, "Gene expression pattern recognition algorithm inferences to classify samples exposed to chemical agents", Proc. SPIE Int. Soc. Opt. Eng. 4623: 85-93.
  • [C1] Green, JR, 1997, "An Analysis of Human Factors in Motor Vehicle Accident Investigations", Proceedings of the Tenth Canadian Multi-Disciplinary Road Safety Conference, Toronto, 9-11 June 1997.

Patents pending

  • [P1] Kotlyar, M, Ableson, A, Green, J, Somogyi, R, Steeg, E, inventors; Molecular Mining Corp, assignee. “Determination of Co-occurrences of Attributes,” International Patent Application No. PCT/CA02/00731 (International Patent Publication No. WO 02/095650). Filed May 17, 2002.

Non-refereed technical papers

  • [T4] Dick K, Russell L, Souley Dosso Y, Green JR, 2017, “Deep Learning for Identifying Threats to Critical Infrastructure”, prepared for Natural Resources Canada, Energy Infrastructure Security Division, 68 pages.
  • [T3] Greiss R, Green JR, Goubran RA, 2016, "Acoustic Noise Management in Open Plan Offices for Critical Infrastructure Security", prepared for Natural Resources Canada, Energy Infrastructure Security Division, 52 pages.
  • [T2] Peace R, Green JR, 2012, "Final Report on Semantic Techniques for Patent Landscape Analyses", prepared for Global Intellectual Strategies, 16 pages.
  • [T1] Dumontier M, Green JR, Golshani A, Smith M.L, Mir-Rashed N, Alamgir Md, Eroukovam V, Dehne F, Cheetham J.J, 2008, "Identifying Significant Features Shared Among Yeast Proteins for Functional Genomics", Nature Precedings, hdl:10101/npre.2008.2311.1, 16 pages.

Invited technical presentations and workshops

  • [W14] Green JR, “Machine Learning with Class (Imbalance),” CASCON 2017 Evidence-based Analytics Workshop, Markham, Ontario, 1 November 2016.
  • [W13] Green JR, "Machine Learning for Bioinformatics in the Face of Class Imbalance", Track Keynote at the World Congress on Medical Physics & Biomedical Engineering, Toronto, Canada, 11 June 2015.
  • [W12] Green JR, “Pattern Classification in the Presence of Class Imbalance”, Invited Talk, Universidad Central “Marta Abreu” de Las Villas, Santa Clara, Cuba, 5 May 2015.
  • [W11] Green JR, "The Future of Assistive Technologies", International Summit on Accessibility, 20 minutes, Ottawa Ontario, 15 July 2014.
  • [W10] Green JR, "Creating Assistive Devices Using Machine Vision", FEDTalks Speaker Series, 60 minutes, Ottawa Ontario, 5 March 2014.
  • [W9] Green JR, "Exact String Matching on Cell B/E and GPGPU Multi-core Architectures for Computational Mass Spectrometry", CASCON Workshop on Parallel Algorithms for Multi-Core and Many-Core Processors, 30 minutes, Markham Ontario, 2 November 2010.
  • [W8] Green JR, "Acceleration of Exact String Matching for Computational Mass Spectrometry", IEEE Computer Society Ottawa Chapter, 90 minutes, Ottawa Ontario, 21 September 2010.
  • [W7] Gelowsky T, Marjaba R, Patulea C, Green JR, Marble AE, "An Assistive Device for Visually Impaired Swimmers", CMBEC09, Calgary Alberta, 20-22 May 2009.
  • [W6] Green JR, Mahmoud H, Dumontier M, "Towards Real Time Protein Identification using the Cell BE: Modeling Tryptic Digestion on the Cell BE Processor", CASCON 2008, Toronto Ontario, 27-28 October 2008.
  • [W5] Green JR and Aitken S, “Fast and Equitable Grading of Labs and Assignments in Science and Engineering”, Educational Development Center, Carleton University, 90 minutes, Ottawa Ontario, 2008-2009.
  • [W4] Green JR, Knisely W, Aghaei A, "An Extensible Genetic Algorithms Library for the Cell BE Processor", CASCON 2007, Toronto Ontario, 22-25 October 2007.
  • [W3] Green JR “Fast and Equitable Grading of Labs and Assignments in Science and Engineering”, Educational Development Center, Carleton University, 90 minutes, Ottawa Ontario, 2007-2008, 2010.
  • [W2] Green JR, “Discovering protein structure and function via nonlinear system identification”, IEEE EMBS Ottawa Chapter, Ottawa Ontario, 23 November 2005.
  • [W1] Green JR, “Dynamic nonlinear protein structure prediction”, Carleton University, Ottawa Ontario, 10 December 2004.

Posters

  • [P15] Castillo-Garit JA, Martínez-López Y, Barigye SJ, Martínez-Santiago O, Marrero-Ponce Y, Green JR, 2017, "Molecular descriptor from atomic weighted vectors to predict aquatic toxicity," MOL2NET 2016 - 2nd International Conference on Multidisciplinary Sciences, 25 Jan 2017.
  • [P14] Nizami S, Nofal S, Statchuk C, Aubertin C, Greenwood K, Harrold J, Green JR, “Pressure Sensitive Mats for Patient Monitoring in the NICU,” CASCON 2017, Markham, Ontario, 31 October 2016.
  • [P13] Nizami S, Green JR, McGregor C, "Detecting Artifacts in Big Physiologic Data to Enhance Clinical Decision Support", Second Annual Data Day, Carleton University, 1 April 2015. (Honarable Mention for Best Poster Competition)
  • [P12] Peace R, Green JR, “Species-specific microRNA prediction for elucidation of freeze-tolerance”, 2014 Ottawa Hospital Research Institute (OHRI) Research Day, Ottawa ON, 13 Nov 2014.
  • [P11] Peace R, Green JR, “MicroRNA prediction for elucidation of freeze-tolerant properties of C. Picta Bellii”, First Annual Data Day, Carleton University, 24 April 2014.
  • [P10] Ruiz-Blanco Y.B, Martinez E, Marrero-Ponce Y, Green JR, “A Hybrid-meta-heuristic Approach to Search Protein Conformational Space”, First Annual Data Day, Carleton University, 24 April 2014.
  • [P9] Amos-Binks A, Dehne F, Green JR, “Towards Personalized Interactomes” , First Annual Data Day, Carleton University, 24 April 2014
  • [P8] Schoenrock A, Samanfar B, Hooshyar M, Phillips C.A, Wang H, Pitre S, Omidi K, Gui Y, Alamgir Md, Barrenas F, Benson M, Langston M, Green JR, Dehne F, Golshani A, “On finding overlapping graph complexes, with applications to PPI network analysis", UT-ORNL-KBRIN Bioinformatics Summit, Louisville, KY, March 2012
  • [P7] Peace R, Mahmoud H, Green JR, “Peptide Sequence Tag Identification Using the Cell BE”, 2nd Sharcnet Symposium on GPU and Cell Computing, University of Waterloo, 20 May 2009.
  • [P6] Mahmoud H, Peace R, Green JR, “Peptide Sequence Tag Identification Using the Cell BE”, 2nd Annual Carleton Cell BE Programming Workshop, Carleton University, 13-15 May 2009. (Best Poster Award)
  • [P5] Rohra R, Kanagasundaram R, Green JR, “Accelerating Nonlinear System Identification Using the Cell BE Processor”, 2nd Annual Carleton Cell BE Programming Workshop, Carleton University, 13-15 May 2009.
  • [P4] Gagne R, Williams A, Dong H, Wade M, Green J, Yauk C, "Guidelines for Chip-chip Pre-processing and Analysis", Health Canada Science Forum, Ottawa, 8-9 October 2008. (Best Poster Award)
  • [P3] Green JR, Knisely W, Aghaei A, "An Extensible Genetic Algorithms Library for the Cell BE Processor", Cell BE Programming Workshop 2008, Carleton University, 15-16 May 2008.
  • [P2] Hamdy M, Belkemah P, Green JR, “Dynamic Nonlinear System Identification on the Cell BE”, Cell BE Programming Workshop 2008, Carleton University, 15-16 May 2008.
  • [P1] Mahmoud H, Dumontier M, Green JR, “Towards Real Time Protein Identification using the Cell BE”, Cell BE Programming Workshop 2008, Carleton University, 15-16 May 2008.

Web Services

Please click here for a list of web services developed in our lab and available to the scientific community.