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BetaWB: modelling and simulating biological processes

Lorenzo Dematte', Corrado Priami and Alessandro Romanel

Summer Computer Simulation Conference 2007 (SCSC 2007)
San Diego, California (USA), July 15-18, 2007


This paper presents BetaSIM, a stochastic simulator for biological processes. The modeling language is based on Beta-binders, a process calculus developed for better representing biological interactions. In order to provide efficient and accurate stochastic simulation, a new stochastic selection algorithm, based on the Gillespie assumption, is presented. Moreover, two companion graphical tools for the model development and simulation results analysis are provided.

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